Ultimate List of Best Tokyo Boutique Hotels
The capital city of Japan was originally known as Edo, which means “estuary.” When Edo became the imperial capital, its name was changed to Tokyo with “to” meaning East and “Kyo” translating to capital. Tokyo, a part of the Kanto Region, is on the south-eastern side of Japan’s main island called Honshu.

Japan’s capital city is considered one of the world’s most essential and powerful global cities. People around the world have fallen for many of Japan’s local ways and cuisine. If you aren’t sure about the first thing to do in Japan, We recommend trying authentic Japanese cuisine. Fish and shellfish are staples of the traditional Japanese diet. Sushi and sashimi are key elements of Japanese culinary identity. If you love sweets, Japanese sweets will surely balance the bitterness of your matcha green tea. Japanese sweets include mochi rice cakes, rice-flour dumplings called Dango, and flower-shaped candies called konpeito.
Bathhouses are a must-try in Japan. And so are watching animes and manga. To explore tourist attractions in Tokyo, make sure you book a boutique hotel that will give you access to the best that this city can offer. For your convenience, here’s a list of only the best boutique hotels in Tokyo:
The Hideout Tokyo

Address: 110-0004 Tokyo-to, Taito-ku Shitaya 1-13-3, Japan
Rates start at 112 USD
If you’re looking for a hideout against the hustle and bustle of life, this boutique hotel brings you the utmost comfort and multipurpose style. This five-room hotel will show you how possible it is to occupy a less than roomy room and still enjoy the pleasure of living in a spacious room. In such a tiny space, you get to enjoy a full-size double bed measuring 140×200 cm, hot and cold air conditioning, a 32-inch flat-screen TV with complimentary streaming, fast Wi-Fi, a mini-fridge, and a complete bathroom amenities. To make your stay more convenient, this boutique hotel makes sure that you are well supplied with toiletries, a set of Japanese cups and wine glasses, teabags that promote good digestion, and instant coffee that will surely energize you.
Cyashitsu Ryokan Asakusa

Address: Taitoku Asakusa 3-32-12, Asakusa, Tokyo, Japan, 111-0032
Rates start at 110 USD
This hotel pours its heart and soul into satisfying its guests. It abides by the Japanese cultural concept of Ichi-go ichi-e, which is about treasuring the unrepeatable nature of a moment. With a tea room design concept screaming uniqueness, it is undeniable that this hotel is unlike any other. The tea ceremony motif is about caring for the guests with sincerity and genuine intentions.
The hotel is built based on Japanese architecture, where the handmade Japanese paper sliding doors allow the transmission of abundant light while dividing the space.
The hotel staffers, who live nearby, are well-trained locals who will be happy to share what they know about the enticing Japanese culture. cyashitsu ryokan Asakusa is undoubtedly the hotel to pick for that once-in-a-lifetime experience.
Mimaru Tokyo Akasaka

Address: Akasaka 7-9-6, Minato-ku, Tokyo, Akasaka, Tokyo, Japan, 107-0052
Rates start at 146 USD
Home is where you are. That is especially true when your room away from home is fully equipped with a well-functioning kitchen that helps you prepare home-cooked meals for yourself and your loved ones. Mimaru Tokyo Akasaka makes sure you have that chance to enjoy local and international cuisine, as well as homemade meals.
This boutique hotel offers a laidback lodging experience where all you need is within the comfort of your Western or Japanese-style hotel room.
If you’re worried about now knowing enough Japanese words to speak to hoteliers, this hotel has you covered. Their receptionists are multilingual with a call center that can support you outside of business hours. Each guestroom has free access to reliable Wi-Fi, so you can be online as long as you want. Want to keep your clothes fresh? Mimaru Tokyo Akasaka has a 24-hour coin laundry service available for your convenience. Other amenities include a TV set, safe, air purifier, washlet, hairdryer, fridge, IH stovetop, microwave, electric kettle, rice cooker, toaster, vacuum cleaner, and iron. Feel at home in one of Tokyo’s best boutique hotels.
Claska Meguro

Address: 1-3-18 Chuo-cho, Meguro-ku, Meguro, Tokyo, Japan, 152-0001
Rates start at 123.37 USD
With 20 rooms and four different design themes, each stay in this boutique hotel will never be the same. Designers chose modern, tatami, contemporary, and story as the design inspiration for the hotel rooms. As you open the doors, every room will give you a breath of fresh air, looking unique and seemingly new.
The rooms are spacious with bespoke furniture that will surely create great and lasting impressions. The furniture used is simple yet elegant with minimal decor because the fixtures make enough statements already.
Enjoy appetizing French-based meals freshly prepared every morning till night. The best savory ingredients are cooked to perfection by the one and only Chef Hidemitsu Yuzawa. Make long-lasting good memories in Japan by having a great time at the extraordinary Claska.
Innsomnia Akasaka

Address: 2-14-14, Akasaka, Tokyo, Japan, 107-0052
Rates start at 137 USD
Have you ever wondered what a Western-styled room looks like with hints of Japanese taste to it? Innsomnia Akasaka offers seven types of rooms looking exactly like the most luxurious and spacious combination of when the Western style meets the Japanese taste. The ambiance is no less than cozy and peaceful.
The rooms are complete with TV sets, room theater, safety box, iron, air purifier, fridge, hairdryer, Blue-ray player, wine opener and ice bucket, an electric pot, free Wi-Fi, and microwave. If you want a room that incites Zen, Innsomnia Akasaka is perfect for you!
Wired Hotel Asakusa

Address: 2-16-2 Asakusa, Taito-ku, Asakusa, Tokyo, Japan, 111-0032
Rates start at 86 USD
Wired Hotel Asakusa brings the luxurious hotel experience into the traditional neighborhood. This boutique hotel is proud of its tailored design and features of its 30 rooms. Having been conceptualized by a Japan-based cafe and restaurant company, Wired Hotel Asakusa’s philosophy is around the hospitality industry, aiming to build communities around all of its locations.
The variety of temple shrines and traditional architecture at Asukasa make it one of Tokyo’s top tourist destinations.
If you like your hotel comfortable and stylish, with a purpose that extends to the community, this boutique hotel is undoubtedly one of the best picks.
Trunk Hotel

Address: 5-31 Jingumae, Shibuya-Ku, Shibuya, Tokyo, Japan, 150-0001
Rates start at 247 USD
Living true to yourself without undue pressure while having a life-sized social purpose is what the Trunk Hotel advocates for. Having coined the term “socializing hotel”, this new movement has its roots well planted here, with its goals soaring above the sky. The design and features of each room in these hotels encourage socializing. With an all-day dining restaurant with an abundant selection of dishes, socializing becomes all the more likely to occur.
Indeed, this is the hotel to be in for people who like to be of help to others while living in the now. What a truly remarkable experience when you stay at this hotel.
Roppongi Hotel S

Address: 1-11-6 Nishiazabu Minato-ku, Aoyama, Tokyo, Japan, 106-0031
Rates start at 102.50 USD
Enjoy your premium stays at Roppongi Hotel S, a hotel that’s modern in style, drawing inspiration from Japanese taste and Zen ambiance. The spacious and luxurious rooms offer a quaint space full of relaxing elements. The rooms vary in design to accommodate your preferred ambiance that will essentially help you wake up to a day full of inspiration.
Roppongi Hotel S is home to four specialty restaurants, with the main dining room being Coconoma. At Coconoma, enjoy premium ingredients and the perfect recipe for fresh and healthy meals. Experience one of the most flavourful steaks at Chef & Butcher Tokyo, authentic Japanese sushi at Small fish, and the most delectable seasonal Japanese cuisine using the finest Saga beef and newly harvested ingredients. Roppongi Hotel S is a boutique hotel for those who appreciate quality meals and notable experience!
Aman Tokyo

Address: The Otemachi Tower, 1-5-6 Otemachi, Chiyoda-ku, Tokyo 100-0004, Japan
Rates start at 1,036 USD
Wood has been a reliable material both in architecture and interior design, and Aman Tokyo knows this too well. It turns wood into a luxurious and comfortable living space, with a panoramic view of one of the most beautiful cities the world has ever seen. The natural vibe derived from wooden designs makes the rooms in this boutique hotel more relaxing and seemingly chaos-free.
The Café by Aman is beloved for its strawberry-infused menu. If you like everything that’s strawberry, this cafe is a must-try for you. The berry soup, strawberry crumble tart, and strawberry mousse with Fromage blanc are the best of its kind. Experience the best that Tokyo has to offer at one of its best and most illustrious hotels, the Aman Tokyo.
The Prince Gallery Tokyo Kioicho

Address: 1-2 Kioi-cho, Chiyoda-ku, Tokyo 102-8585 Japan
Rates start at 411.20 USD
With 19 beautiful and spacious rooms, this boutique hotel leaves its guests feeling refreshed. The fitness center and spa welcome guests with open arms and take away worries. The Swiss Perfection spa KIOI offers a range of pampering treatments, including a lap pool and couple’s suites with magnificent views.
The panoramic view of the breakfast buffet is uplifting and indulgent. The main dining at Washoku Souten serves seasonal ingredients where customers can taste contemporary Japanese cuisine in a crystal-styled room. If you fancy romantic dinners in the garden, the Oasis garden is the choice for you. This Western-style restaurant has a hanging garden concept where buffet, ala carte, and course meals are served. What a truly fine experience from The Prince Gallery Tokyo Kioicho!
*Tokyo Boutique Hotel Rates may change without prior notice; please visit Agoda for updated hotel rates, availability, and current hotel promos.
Tokyo Travel and Tour Packages
Searching for the best Boutique hotels and Tokyo affordable flights? Check out our complete list of affordable hotels and resorts via Agoda or you may also see available Airbnb properties in the city.
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